National Calendar

EuroCC INDICO

EuroCC INDICO instance @wordpress
URL : https://indico.eurocc.fccn.pt

September 2021

Thursday September 9 09:00 – Friday September 10 16:30

GROMACS Workshop

Molecular Dynamic (MD) simulations are fundamental to understand the mechanism of biological systems. This workshop aims to provide an introduction on the use and on the features of a well-established and highly used package in the field GROMACS.

The workshop covers an introduction to MD simulation, to accelerated weight histogram methods and to GraphicsGraphical Processing Units (GPU) performance. At the end the participants will be familiar with the features of GROMACS code, and they will be able to set up and perform molecular simulation on the covered topic.
More information: https://www.eventbrite.pt/e/bilhetes-gromacs-workshop-162032753327
https://indico.eurocc.fccn.pt/event/16/

Wednesday September 15

14:00 – 16:00
Using supercomputers – from environmental modules to job submission
High Performance Computing Centre - U.Évora

https://www.oblivion.uevora.pt/using-supercomputers-for-scientific-computing/

Syllabus: Training session comprising the setup of the computing environment using environment modules, software compilation, SLURM work manager on the user perspective, job submissions. Hands-on session.

https://indico.eurocc.fccn.pt/event/4/

October 2021

Wednesday October 6 10:00 – Friday October 8 17:00

Introduction to parallel computing

Introduction (Terminology; Parallelization, load balancing; Evaluating program performance; Architectures (Distributed memory, Shared memory, Hybrid systems); Parallel programming (Message passing, MPI; Multithreading, OpenMP; Accelerators, OpenACC); Debugging and Parallel program performance analysis.
https://indico.eurocc.fccn.pt/event/13/

Wednesday October 27 09:00 – Thursday October 28 18:00

Parallel I/O and data formats
High Performance Computing Centre - U.Évora

https://www.oblivion.uevora.pt/parallel-i-o-and-data-formats/

Syllabus: Storage filesystems; I/O strategies (one process, task-localfiles, shared files) and workflow; Parallel I/O software
stack; MPI I/O; Portable data formats (HDF5, parallel NetCDF4).

https://indico.eurocc.fccn.pt/event/7/

December 2021

Monday December 6

14:00 – 16:00
Using supercomputers – from environmental modules to job submission
High Performance Computing Centre - U.Évora

https://www.oblivion.uevora.pt/using-supercomputers-for-scientific-computing/

Syllabus: Training session comprising the setup of the computing environment using environment modules, software compilation, SLURM work manager on the user perspective, job submissions. Hands-on session.
https://indico.eurocc.fccn.pt/event/5/

Tuesday December 14 14:00 – Thursday December 16 16:00

Software development, refactoring and acceleration
High Performance Computing Centre - U.Évora

https://www.oblivion.uevora.pt/using-supercomputers-for-scientific-computing/

Syllabus: Introduction to code profiling and refactoring; Profiling tools;Refactoring tools and software; Refactoring analysis;Acceleration techniques; Practical examples using Scalasca, Score-P, Vampir.

https://indico.eurocc.fccn.pt/event/6/